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Fluorescent microscopy of coronal sections from D1-Cre x Ai9 mouse: d1CreS3

ace-oat-vat Creative Commons Attribution 4.0 International (CC BY 4.0) Aligning Science Across Parkinson’s (ASAP)

Cite this dataset

Albarran, Eddy, Fushiki, Akira, Nelson, Anders, Chaimowitz, Corryn, Nikoobakht, Laudan, Peterka, Darcy, Costa, Rui M.. (2025). Fluorescent microscopy of coronal sections from D1-Cre x Ai9 mouse: d1CreS3 [Dataset/Microscopy]. Brain Image Library.

Abstract

This dataset is part of a whole-brain imaging experiment describing the expression of Cre or FlpO recombinase in various regions of the brain from various newly-generated knock-in lines (D1-Cre, A2a-Cre, D1-FlpO, A2a-FlpO, DAT-FlpO). Knock-in recombinse lines were crosses to fluorescent reporter lines (e.g., Ai9) and then animals were perfused and imaged using fluorescent microscopy. Coronal and/or sagittal sections are present for each line to visualize brain-wide expression of the recombinase activity.

Contributors

Funding

Technical Information

Modality
population imaging
Technique
other

Instrument

microscopetype Upright
microscopemanufacturerandmodel Nikon AZ100 Multizoom Slide Scanner
objectivename
objectiveimmersion Air
objectivena
objectivemagnification
detectortype sCMOS
detectormodel
illuminationtypes
illuminationwavelength
detectionwavelength
sampletemperature

Specimen

localid d1CreS3
species Mouse
ncbitaxonomy NCBI:txid10090
age 60-70
ageunit Days
sex Male
genotype Strain_Name='D1-Cre';Cre_Driver_Line='Drd1';Reporter_Name='Ai9';
organlocalid d1CreS3
organname Brain
samplelocalid d1CreS3
atlas
locations
linkage []

Image

xaxis left-to-right
obliquexdim1
obliquexdim2
obliquexdim3
yaxis superior-to-inferior
obliqueydim1
obliqueydim2
obliqueydim3
zaxis anterior-to-posterior
obliquezdim1
obliquezdim2
obliquezdim3
landmarkname
landmarkx
landmarky
landmarkz
number 1,2,3,4,magenta,red,green,blue
displaycolor (1.0, 0.0, 1.0),(1.0, 0.0, 0.0),(0.0, 1.0, 0.0),(0.0, 0.0, 1.0)
representation
flurophore
stepsizex 9.46
stepsizey 9.46
stepsizez
stepsizet
channels
slices
z
xsize
ysize
zsize
gbytes
files
dimensionorder

Data