This repository is under review for potential modification in compliance with Administration directives.

 

BIL Logo Confocal imaging of female P14 Ooceraea biroi whole antennae

[ DOI: https://doi.org/10.35077/ace-oak-dig, BIL ID: ace-oak-dig ]
Dataset Citation:
Kronauer Lab. (2025). Confocal imaging of female P14 Ooceraea biroi whole antennae [Dataset/Microscopy]. Brain Image Library. https://doi.org/10.35077/ace-oak-dig

 

Abstract:
The following data collection comprises several experiments that use confocal fluorescence microscopy and smRNA FISH to investigate the transcriptional mechanism of olfactory receptors (ORs) expression in Ooceraea biroi antennae. Experiments were carried out in whole antennae in which olfactory sensory neurons were stained with custom RNA FISH probes. These data demonstrate that bidirectional transcription occurs leading to 1) inhibition of transcription of upstream ORs in a tandem array and 2) non-canonical readthrough producing non-translated transcripts from ORs downstream of the initiation site.

 

Contributors and Roles:
Kronauer Lab  ( ResearchGroup ) ;   Kronauer, Daniel  ( ProjectLeader ),  The Rockefeller University

 

Funding:
National Institutes of Health  ( 1-R01-NS123899-01 ) Representation and modulation of social information in the ant chemosensory system

 

Technical Information:
cell morphology (Modality) / smFISH (Technique)

Each subdirectory contains individual antennae stained for distinct genes. These names correspond to the data included in our publication. The target of each probe is specified in the subdirectory name (U34, Chymotrypsin, Lnc4, T79-intergenic, 9E88, etc.). The numbers 488, 546, 594, 647 correspond to the Alexa fluorophores used for staining and imaging. Therefore, “U34-B3-546” indicates that U34 is in the red Alexa546 channel. All samples are age-matched to P14 (pupal day 14). Each TIFF image represents a distinct biological replicate of the same stain.

Instrument Metadata
microscopetype Confocal
microscopemanufacturerandmodel Zeiss LSM 900
objectivename Zeiss LD LCI Plan-Apochromat
objectiveimmersion Glycerol
objectivena 1.2NA
objectivemagnification 40x
detectortype PMT
detectormodel
illuminationtypes
illuminationwavelength
detectionwavelength
sampletemperature
Specimen Metadata
localid 20250307_B1_P14_U34-B3-546_Chymotrypsin-B2-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250307_B1_P14_U34-B3-546_Chymotrypsin-B2-647_DAPI
atlas
locations
linkage []
localid 20250325_4_P14_U34-B3-488_lnc4-B1-546_U21-B5-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250325_4_P14_U34-B3-488_lnc4-B1-546_U21-B5-647_DAPI
atlas
locations
linkage []
localid 20250325_5_P14_G1-b1-546_lnc7-B2-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250325_5_P14_G1-b1-546_lnc7-B2-647_DAPI
atlas
locations
linkage []
localid 20250325_6_P14_9E198-B3-488_9E197-B1-546_9E196-B2-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250325_6_P14_9E198-B3-488_9E197-B1-546_9E196-B2-647_DAPI
atlas
locations
linkage []
localid 20250328_1_P14_T79-intergenic-b2-647_T79-exonic-b1-546_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250328_1_P14_T79-intergenic-b2-647_T79-exonic-b1-546_DAPI
atlas
locations
linkage []
localid 20250328_2_P14_R2-b3-488_Q1-b1-546_Lnc6-b2-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250328_2_P14_R2-b3-488_Q1-b1-546_Lnc6-b2-647_DAPI
atlas
locations
linkage []
localid 20250328_3_P14_Lnc3-b3-488_L16-b2-594_Lnc2-b5-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250328_3_P14_Lnc3-b3-488_L16-b2-594_Lnc2-b5-647_DAPI
atlas
locations
linkage []
localid 20250328_4_P14_9E129-b3-488_LOC104-b1-546_9E116-b2-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250328_4_P14_9E129-b3-488_LOC104-b1-546_9E116-b2-647_DAPI
atlas
locations
linkage []
localid 20250328_5_P14_LOC603-b3-488_9E108-b1-546_9E116-b2-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250328_5_P14_LOC603-b3-488_9E108-b1-546_9E116-b2-647_DAPI
atlas
locations
linkage []
localid 20250508_P14_T_9E89-b1-546_9E99-B2-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250508_P14_T_9E89-b1-546_9E99-B2-647_DAPI
atlas
locations
linkage []
localid 20250508_P14_T_9E99-b2-594_LOC105286072-B5-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250508_P14_T_9E99-b2-594_LOC105286072-B5-647_DAPI
atlas
locations
linkage []
localid 20250523_A_P14_T_9E213-546_9E214-488_Intergenic-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250523_A_P14_T_9E213-546_9E214-488_Intergenic-647_DAPI
atlas
locations
linkage []
localid 20250523_B_P14_T_9E88-546_Lnc-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250523_B_P14_T_9E88-546_Lnc-647_DAPI
atlas
locations
linkage []
localid 20250523_C_P14_T_U54-647_Lnc4-546_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250523_C_P14_T_U54-647_Lnc4-546_DAPI
atlas
locations
linkage []
localid 20250701_A_P14_9E118-EXONS-B1-546_9E118-INTRONS-B2-647_9E129-B3-488_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250701_A_P14_9E118-EXONS-B1-546_9E118-INTRONS-B2-647_9E129-B3-488_DAPI
atlas
locations
linkage []
localid 20250701_F_P14_U34-b3-546_Orco-b4-647_DAPI
species Ooceraea biroi
ncbitaxonomy NCBI:txid2015173
age 14 day pupae
ageunit Days
sex Female
genotype
organlocalid
organname
samplelocalid 20250701_F_P14_U34-b3-546_Orco-b4-647_DAPI
atlas
locations
linkage []
Image Metadata
xaxis NA
obliquexdim1
obliquexdim2
obliquexdim3
yaxis NA
obliqueydim1
obliqueydim2
obliqueydim3
zaxis NA
obliquezdim1
obliquezdim2
obliquezdim3
landmarkname
landmarkx
landmarky
landmarkz
number 1, 2 ,3, 4, magenta, yellow, cyan, grey
displaycolor (1.0, 0.0, 1.0), (1.0, 1.0, 0.0), (0.0, 1.0, 1.0), (0.5, 0.5, 0.5)
representation
flurophore
stepsizex 0.09748
stepsizey 0.09748
stepsizez
stepsizet
channels
slices 100(approx)
z
xsize
ysize
zsize
gbytes
files
dimensionorder

 

License:
Data:

Data location on the Brain Image Library Analysis Ecosystem:
/bil/data/0c/c6/0cc643f6e5fd70cc/

Dataset download link:
https://download.brainimagelibrary.org/0c/c6/0cc643f6e5fd70cc/

Metadata download link:
https://api.brainimagelibrary.org/retrieve?bildid=ace-oak-dig