Subcortical Spatial Transcriptomic Atlas of the Adult Rhesus Macaque: QM23.50.001.CX.46
[ BIL ID: ace-dud-was ]
Dataset Citation:
Allen Institute, Lein, Ed, Zeng, Hongkui, Lein, Ed, Seeman, Stephanie, Hodge, Rebecca, McMillen, Delissa, Martin, Naomi, Valera Cuevas, Nasmil, Olsen, Paul, Campos, Jazmin, VanNess, Marshall, Nagra, Josh. (2024). Subcortical Spatial Transcriptomic Atlas of the Adult Rhesus Macaque: QM23.50.001.CX.46 [Dataset/Microscopy]. Brain Image Library.
Abstract:
MERSCOPE imaging of 10µm sections of core basal ganglia regions (i.e., caudate nucleus, putamen, substantia nigra, and nucleus accumbens) of fresh-frozen macaca mulatta brain slabs. Individual sections are spaced at 1mm intervals through five consecutive tissue slabs covering ~24mm of anterior to posterior extent. Regions of interest present in the sections include the core basal ganglia structures as well as thalamus and portions of the hippocampal formation.
Contributors and Roles:
Allen Institute ( ResearchGroup )
;
Lein, Ed ( ProjectLeader ),
Allen Institute for Brain Science
;
Zeng, Hongkui ( ProjectLeader ),
Allen Institute for Brain Science
;
Lein, Ed ( ContactPerson ),
Allen Institute for Brain Science
;
Seeman, Stephanie ( Researcher ),
Allen Institute for Brain Science
;
Hodge, Rebecca ( Researcher ),
Allen Institute for Brain Science
;
Waters, Jack ( Other ),
Allen Institute for Brain Science
;
McMillen, Delissa ( DataCollector ),
Allen Institute for Brain Science
;
Kruse, Lauren ( ProjectManager ),
Allen Institute for Brain Science
;
Martin, Naomi ( DataCollector ),
Allen Institute for Brain Science
;
Valera Cuevas, Nasmil ( DataCollector ),
Allen Institute for Brain Science
;
Olsen, Paul ( DataCollector ),
Allen Institute for Brain Science
;
Campos, Jazmin ( DataCollector ),
Allen Institute for Brain Science
;
VanNess, Marshall ( DataCollector ),
Allen Institute for Brain Science
;
Nagra, Josh ( DataCollector ),
Allen Institute for Brain Science
Funding:
National Institutes of Health
( 1-UM1-MH130981-01 ) Functionally guided adult whole brain cell atlas in human and NHP
Technical Information:
spatial transcriptomics (Modality)
/ MERFISH (Technique)
Instrument Metadata
Specimen Metadata
| localid | QM23.50.001 |
| species | Rhesus Macaque |
| ncbitaxonomy | NCBI:txid9544 |
| age | 10.0 |
| ageunit | Years |
| sex | Male |
| genotype | |
| organlocalid | QM23.50.001.CX |
| organname | Brain |
| samplelocalid | QM23.50.001.CX.46 |
| atlas | |
| locations | Subcortex |
| linkage | [] |
Image Metadata
| xaxis | left-to-right |
| obliquexdim1 | |
| obliquexdim2 | |
| obliquexdim3 | |
| yaxis | left-to-right |
| obliqueydim1 | |
| obliqueydim2 | |
| obliqueydim3 | |
| zaxis | anterior-to-posterior |
| obliquezdim1 | |
| obliquezdim2 | |
| obliquezdim3 | |
| landmarkname | |
| landmarkx | |
| landmarky | |
| landmarkz | |
| number | NA |
| displaycolor | NA |
| representation | |
| flurophore | DAPI, PolyT |
| stepsizex | 0.108 |
| stepsizey | 0.108 |
| stepsizez | 1.5 |
| stepsizet | |
| channels | 3.0 |
| slices | 7.0 |
| z | 1.0 |
| xsize | |
| ysize | |
| zsize | |
| gbytes | |
| files | |
| dimensionorder |
License:
Data:
Data location on the Brain Image Library Analysis Ecosystem:
/bil/data/18/aa/18aa91680201e328/QM23.50.001.CX.46
Dataset download link:
https://download.brainimagelibrary.org/18/aa/18aa91680201e328/QM23.50.001.CX.46
Metadata download link:
https://api.brainimagelibrary.org/retrieve?bildid=ace-dud-was
Manifest download link:
/bil/pscstaff/icaoberg/bil-inventory/datasets/json/ace-dud-was.json