VA00265 300-gene MERFISH results of a GW24 human visual cortex
[ BIL ID: ace-dry-dog ]
Dataset Citation:
Wang, Li. (2024). VA00265 300-gene MERFISH results of a GW24 human visual cortex [Dataset/Microscopy]. Brain Image Library.
Abstract:
This dataset is part of a set of MERFISH experiments to identify the cell types and their locations in the developing human visual cortex.
Methods:
https://vizgen.com/resources/user-guides/
Contributors and Roles:
Wang, Li ( Researcher ),
University of California San Francisco
;
Kriegstein, Arnold ( ProjectLeader ),
University of California San Francisco
Funding:
National Institutes of Health
( 5-U01-MH114825-05 ) A Cellular Resolution Census of the Developing Human Brain
Technical Information:
spatial transcriptomics (Modality)
/ MERFISH (Technique)
Instrument Metadata
Specimen Metadata
| localid | ARK44 |
| species | Human |
| ncbitaxonomy | NCBI:txid9606 |
| age | 24.0 |
| ageunit | Gestational weeks |
| sex | Unknown |
| genotype | |
| organlocalid | ARKFrozen-65-V1 |
| organname | Brain |
| samplelocalid | ARKFrozen-65-V1 |
| atlas | |
| locations | V1C - Primary visual cortex |
| linkage | [] |
Image Metadata
| xaxis | superior-to-inferior |
| obliquexdim1 | |
| obliquexdim2 | |
| obliquexdim3 | |
| yaxis | left-to-right |
| obliqueydim1 | |
| obliqueydim2 | |
| obliqueydim3 | |
| zaxis | left-to-right |
| obliquezdim1 | |
| obliquezdim2 | |
| obliquezdim3 | |
| landmarkname | |
| landmarkx | |
| landmarky | |
| landmarkz | |
| number | not applicable |
| displaycolor | not applicable |
| representation | |
| flurophore | |
| stepsizex | 9.25935554504394 pixels/micron |
| stepsizey | 9.25935554504394 pixels/micron |
| stepsizez | 1 micron |
| stepsizet | |
| channels | |
| slices | |
| z | |
| xsize | |
| ysize | |
| zsize | |
| gbytes | |
| files | |
| dimensionorder |
License:
Data:
Data location on the Brain Image Library Analysis Ecosystem:
/bil/data/f4/e6/f4e6e00f004c85ba/ARKFrozen-65-V1/
Dataset download link:
https://download.brainimagelibrary.org/f4/e6/f4e6e00f004c85ba/ARKFrozen-65-V1/
Metadata download link:
https://api.brainimagelibrary.org/retrieve?bildid=ace-dry-dog
Manifest download link:
/bil/pscstaff/icaoberg/bil-inventory/datasets/json/ace-dry-dog.json