Cite this dataset

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Zhuang, Xiaowei. (2025). Mouse data from sample: zhuang_merfish_MOp, modality: spatial transcriptomics. [Dataset/Microscopy]. Brain Image Library.

Abstract

MERFISH data on mouse primary motor cortex (updated)

Methods

spatial transcriptomics / spatial transcriptomics / MERFISH

Contributors

• Zhuang, Xiaowei ORCID Harvard University ProjectLeader

Funding

• National Institutes of Health U19MH114830, U19MH114821 A comprehensive whole-brain atlas of cell types in the mouse

Technical Information

Modality

spatial transcriptomics

Technique

MERFISH

Specimen

localid	zhuang_merfish_MOp
species	mouse
ncbitaxonomy	NCBI:txid10090
age	NA
ageunit	NA
sex	Unknown
genotype	Strain_Name='C57BL6';
organlocalid
organname	Brain
samplelocalid	zhuang_merfish_MOp
atlas	allen
locations	primary motor cortex (Mop)
linkage	[]

Image

xaxis	NA
obliquexdim1
obliquexdim2
obliquexdim3
yaxis	NA
obliqueydim1
obliqueydim2
obliqueydim3
zaxis	NA
obliquezdim1
obliquezdim2
obliquezdim3
landmarkname
landmarkx
landmarky
landmarkz
number	NA
displaycolor	NA
representation
flurophore
stepsizex	NA
stepsizey	NA
stepsizez
stepsizet
channels
slices
z
xsize
ysize
zsize
gbytes	13096.711765283
files	11570
dimensionorder

Data

Analysis Ecosystem path

/bil/data/cf/1c/cf1c1a431ef8d021

Download

BIL data will be unavailable between October 5 and October 16. Read More
https://download.brainimagelibrary.org/cf/1c/cf1c1a431ef8d021

Metadata

https://api.brainimagelibrary.org/retrieve?bildid=ace-ban-win