{"success": "true", "endpoint": "Retrieve/bildid", "message": "GET success", "bildid": "ace-dim-own", "retjson": [{"Submission": {"sheet": "550", "collection": "1784", "submission_uuid": "233eb9bd2df10f2e", "method": "ingest_1", "project": "DP2 Chen", "consortium": "", "metadata": "2.0", "bildate": "2023-08-29", "doi": ""}, "Contributors": [{"contributorname": "Chen, Xiaoyin", "creator": "Yes", "contributortype": "ProjectLeader", "nametype": "Personal", "nameidentifier": "https://orcid.org/0000-0002-2807-6125", "nameidentifierscheme": "ORCID", "affiliation": "Allen Institute for Brain Science", "affiliationidentifier": "https://ror.org/00dcv1019", "affiliationidentifierscheme": "ROR"}, {"contributorname": "Rue, Mara", "creator": "Yes", "contributortype": "ProjectMember", "nametype": "Personal", "nameidentifier": "https://orcid.org/0000-0002-4305-7838", "nameidentifierscheme": "ORCID", "affiliation": "Allen Institute for Brain Science", "affiliationidentifier": "https://ror.org/00dcv1019", "affiliationidentifierscheme": "ROR"}, {"contributorname": "Zhang, Aixin", "creator": "Yes", "contributortype": "ProjectMember", "nametype": "Personal", "nameidentifier": "https://orcid.org/0000-0002-6904-4285", "nameidentifierscheme": "ORCID", "affiliation": "Allen Institute for Brain Science", "affiliationidentifier": "https://ror.org/00dcv1019", "affiliationidentifierscheme": "ROR"}, {"contributorname": "Fischer, Stephan", "creator": "No", "contributortype": "ProjectMember", "nametype": "Personal", "nameidentifier": "https://orcid.org/0000-0002-7034-4103", "nameidentifierscheme": "ORCID", "affiliation": "Institut Pasteur", "affiliationidentifier": "https://ror.org/0495fxg12", "affiliationidentifierscheme": "ROR"}], "Funders": [{"fundername": "National Institutes of Health", "funding_reference_identifier": "https://ror.org/01cwqze88", "funding_reference_identifier_type": "ROR", "award_number": "1-U19-MH114830-01", "award_title": "A comprehensive whole-brain atlas of transcriptomic cell types in the mouse"}], "Publication": [{"id": "165", "relatedidentifier": "https://doi.org/10.1101/2022.11.06.515380", "relatedidentifiertype": "DOI", "pmcid": "", "relationtype": "IsCitedBy", "citation": "Chen, X., Fischer, S., Zhang, A., Gillis, J., & Zador, A. (2022). Modular cell type organization of cortical areas revealed by in situ sequencing.\u00a0BioRxiv, 2022-11. DOI: https://doi.org/10.1101/2022.11.06.515380", "sheet_id": "550", "data_set_id": "None"}], "Instrument": [{"microscopetype": "Confocal", "microscopemanufacturerandmodel": "NikonTi2E with Crest Xlight v3", "objectivename": "Nikon", "objectiveimmersion": "Air", "objectivena": "0.7", "objectivemagnification": "20x", "detectortype": "CMOS", "detectormodel": "Photometrics Kinetix", "illuminationtypes": "SolidState", "illuminationwavelength": "", "detectionwavelength": "", "sampletemperature": ""}], "Specimen": [{"localid": "D078-1L", "species": "Mouse", "ncbitaxonomy": "NCBI:txid10090", "age": "28.0", "ageunit": "Days", "sex": "Male", "genotype": "Strain_Name='C57BL/6J'", "organlocalid": "D078-1L", "organname": "Brain", "samplelocalid": "20230406_VisReorg_D078-1L", "atlas": "AllenMouseV3", "locations": "Brain", "linkage": []}], "Dataset": [{"bildirectory": "/bil/data/23/3e/233eb9bd2df10f2e/20230404_VisReorg_D078_2L", "title": "Male C57BL/6J D078-2L whole-hemisphere BARseq, enucleated at birth", "socialmedia": "D078-2L", "subject": "", "subjectscheme": "", "rights": "Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)", "rightsuri": "https://creativecommons.org/licenses/by-sa/4.0/", "rightsidentifier": "CC-BY-NC-SA-4.0", "dataset_image": "", "generalmodality": "spatial transcriptomics", "technique": "other", "other": "Barseq", "abstract": "This dataset is spatial transcriptomic data covering a whole mouse hemi-cortex from a an animal enucleatd at birth (P1), data from this brain are paired with sham littermate control DO78-1L. These data were used as part of the enucleated group in analysis. The 104 gene panel is optimized for distinguishing cortical cell types. We analalyzed changes in gene expression and transcriptomic cell types from a total of eight experimental brains (comparing four sham control and four enucleated littermates) to ask how gene expression and cell types change after bilateral enucleation.", "methods": "A full protocol describing this work is available at protocols.io: https://dx.doi.org/10.17504/protocols.io.81wgbp4j3vpk/v8", "technicalinfo": "See https://doi.org/10.1101/2022.11.06.515381 for data processing details.", "doi": "", "dataset_size": "1363.14814366", "number_of_files": "15096"}], "Tags": [], "Assets": [{"bildid": "ace-dim-own", "bildoi": "", "manifestfile": "/bil/pscstaff/icaoberg/bil-inventory/datasets/json/ace-dim-own.json", "brainpiroot": "", "brainpidata": []}], "Image": [{"xaxis": "right-to-left", "obliquexdim1": "", "obliquexdim2": "", "obliquexdim3": "", "yaxis": "inferior-to-superior", "obliqueydim1": "", "obliqueydim2": "", "obliqueydim3": "", "zaxis": "anterior-to-posterior", "obliquezdim1": "", "obliquezdim2": "", "obliquezdim3": "", "landmarkname": "", "landmarkx": "", "landmarky": "", "landmarkz": "", "number": "1,2,3,4", "displaycolor": "(Cyan,Yellow,Magenta,Gray)", "representation": "(G,T,A,C)", "flurophore": "(tdTomato,EGFP)", "stepsizex": "0.32um", "stepsizey": "0.32um", "stepsizez": "1.5um", "stepsizet": "", "channels": "4.0", "slices": "21.0", "z": "1.0", "xsize": "", "ysize": "", "zsize": "", "gbytes": "", "files": "", "dimensionorder": ""}]}]}